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ElectronScientific FiguresOpen Source
R client for the EWAS Atlas: query CpG probes, genes and regions, run trait/GO/KEGG enrichment and plot the results. Available on CRAN.
RCRANEWASEpigenetics
Nextflow pipeline for Allele-specific Expression analysis
NextflowNGSnf-core
Comprehensive Reproducibility Framework for R and Bioinformatics Workflows.
RReproducibility
GIMP (Genomic Imprinting Methylation Patterns) is a ShinyApp build in R for analyzing imprinted differentially methylated regions. It provides a GUI for analyzing CpGs at imprinted loci.
R ShinyAppGenomic Imprinting
Enhanced the Ensembl VEP GeneBe plugin by implementing support for personal API keys, allowing users to extend daily API call limits for extensive data retrieval.
PerlVEPVariant Annotation